📝 Publications
(*: equal contribution, ✉: corresponding authors)
2025
arXiv
SPHENIC: Topology-Aware Multi-View Clustering for Spatial Transcriptomics
Chenkai Guo, Yikai Zhu, Renxiang Guan, Jinli Ma, Siwei Wang, Ke Liang, Guangdun Peng, Dayu Hu ✉
Keywords:
- Persistent Homology
- Multi-view Clustering
- Graph Learning
Small Methods
Learning Phenotype Associated Signature in Spatial Transcriptomics with PASSAGE
Chen-Kai Guo*, Chen-Rui Xia*, Guangdun Peng✉, Zhi-Jie Cao✉, Ge Gao✉
Keywords:
- Multi-slice Spatial Analysis
- Graph Attention Network
- Contrastive Learning
Jincan Ke, Jian Xu, Jia Liu, Yumeng Yang, Chenkai Guo, Bingbing Xie, Guizhong Cui, Guangdun Peng✉, and Shengbao Suo✉.
"High-resolution mapping of single cells in spatial context."
Nature Communications (2025).
Xiaogao Meng*, Wenjia Li*, Jian Xu, Yao Yao, An Gong, Yumeng Yang, Fangfang Qu, Chenkai Guo, Hui Zheng, Guizhong Cui✉, Shengbao Suo✉, Guangdun Peng✉..
"Spatiotemporal transcriptome atlas of developing mouse lung."
Science Bulletin (2025).
2022
Nicola Murgia*, Yuan Ma*, Syeda Sadia Najam*, Yu Liu, Joanna Przybys, Chenkai Guo, Witold Konopka, and Ilya A. Vinnikov✉.
"In vivo reductionist approach identifies miR-15a protecting mice from obesity."
Frontiers in Endocrinology (2022).